STRINGSTRING
Bra001467 protein (Brassica rapa) - STRING interaction network
"Bra001467" - AT3G12740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001467AT3G12740 (E=2e-169) ALIS1 | ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (349 aa)    
Predicted Functional Partners:
Bra024622
AT3G13900 (E=3e-139) | ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (638 aa)
     
 
  0.773
Bra039027
AT3G25610 (E=3e-146) | haloacid dehalogenase-like hydrolase family protein (283 aa)
     
 
  0.764
Bra030891
AT1G54280 (E=3e-102) | haloacid dehalogenase-like hydrolase family protein (210 aa)
     
 
  0.764
Bra012469
AT3G25610 (E=0.0) | haloacid dehalogenase-like hydrolase family protein (1143 aa)
     
 
  0.764
Bra005828
AT5G04930 (E=0.0) ALA1 | ALA1 (aminophospholipid ATPase1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (1150 aa)
     
 
  0.764
Bra035422
AT1G59820 (E=0.0) ALA3 | ALA3 (Aminophospholipid ATPase3); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / phospholipid transporter (1209 aa)
     
 
  0.730
Bra017897
AT1G59820 (E=0.0) ALA3 | ALA3 (Aminophospholipid ATPase3); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / phospholipid transporter (1825 aa)
     
 
  0.730
Bra026515
AT3G25610 (E=0.0) | haloacid dehalogenase-like hydrolase family protein (1202 aa)
     
 
  0.659
Bra031711
AT1G59820 (E=0.0) ALA3 | ALA3 (Aminophospholipid ATPase3); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / phospholipid transporter (1216 aa)
     
 
  0.654
Bra030991
AT1G17500 (E=0.0) | ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (1218 aa)
     
 
  0.646
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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