STRINGSTRING
Bra001469 protein (Brassica rapa) - STRING interaction network
"Bra001469" - AT3G12775 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra001469AT3G12775 (E=1e-089) | ubiquitin-conjugating enzyme family protein (374 aa)    
Predicted Functional Partners:
Bra024290
AT5G64370 (E=5e-222) BETA-UP | BETA-UP (beta-ureidopropionase); beta-ureidopropionase (408 aa)
           
  0.505
Bra037776
AT5G64370 (E=9e-220) BETA-UP | BETA-UP (beta-ureidopropionase); beta-ureidopropionase (408 aa)
           
  0.483
Bra002216
AT5G19140 (E=5e-124) ATAILP1, AILP1 | AILP1 (236 aa)
           
  0.477
Bra003397
AT3G59970 (E=0.0) MTHFR1 | MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH) (592 aa)
           
  0.449
Bra000685
AT4G09620 (E=2e-104) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Mitochodrial transcription termination factor-related (InterPro-IPR003690); Has 120 Blast hits to 97 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 17 (source- NCBI BLink). (210 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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