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Bra001472 protein (Brassica rapa) - STRING interaction network
"Bra001472" - AT3G12820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001472AT3G12820 (E=9e-090) AtMYB10 | AtMYB10 (myb domain protein 10); DNA binding / transcription factor (233 aa)    
Predicted Functional Partners:
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
     
  0.964
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
     
  0.964
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
  0.927
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
       
  0.924
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.917
Bra010859
AT1G28560 (E=1e-114) SRD2 | SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2); DNA binding (488 aa)
     
  0.785
Bra041053
AT5G41770 (E=3e-066) | crooked neck protein, putative / cell cycle protein, putative (384 aa)
     
  0.778
Bra038885
AT5G41770 (E=9e-131) | crooked neck protein, putative / cell cycle protein, putative (318 aa)
     
  0.778
Bra031930
AT5G41770 (E=6e-264) | crooked neck protein, putative / cell cycle protein, putative (667 aa)
     
  0.778
Bra028504
AT5G41770 (E=0.0) | crooked neck protein, putative / cell cycle protein, putative (706 aa)
     
  0.778
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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