STRINGSTRING
Bra001474 protein (Brassica rapa) - STRING interaction network
"Bra001474" - AT3G12860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001474AT3G12860 (E=1e-235) | nucleolar protein Nop56, putative (505 aa)    
Predicted Functional Partners:
Bra039543
AT3G21540 (E=1e-264) | transducin family protein / WD-40 repeat family protein (944 aa)
     
  0.999
Bra023582
AT5G16750 (E=0.0) TOZ | TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding (868 aa)
     
  0.998
Bra008598
AT5G16750 (E=0.0) TOZ | TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding (868 aa)
     
  0.998
Bra031535
AT1G06720 (E=0.0) | INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species- Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source- NCBI BLink). (1667 aa)
     
  0.998
Bra015522
AT1G06720 (E=0.0) | INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species- Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source- NCBI BLink). (1160 aa)
     
  0.998
Bra019148
AT4G25630 (E=3e-129) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (307 aa)
 
  0.998
Bra013905
AT4G25630 (E=4e-127) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (310 aa)
 
  0.998
Bra022595
AT4G25630 (E=4e-118) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (291 aa)
 
  0.998
Bra028311
AT5G52470 (E=2e-025) FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | FIB1 (FIBRILLARIN 1); snoRNA binding (189 aa)
 
  0.998
Bra010455
AT4G25630 (E=1e-114) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (291 aa)
 
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (15%) [HD]