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Bra001476 protein (Brassica rapa) - STRING interaction network
"Bra001476" - AT3G12900 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001476AT3G12900 (E=1e-183) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (357 aa)    
Predicted Functional Partners:
Bra010214
AT4G31940 (E=2e-259) CYP82C4 | CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (525 aa)
   
 
  0.694
Bra003129
AT3G53280 (E=1e-226) CYP71B5 | CYP71B5 (CYTOCHROME P450 71B5); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (500 aa)
       
  0.598
Bra002944
AT5G54940 (E=9e-055) | eukaryotic translation initiation factor SUI1, putative (232 aa)
              0.520
Bra008333
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (906 aa)
     
   
  0.507
Bra015656
AT1G77760 (E=1e-253) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase (890 aa)
     
   
  0.505
Bra003670
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (910 aa)
     
   
  0.505
Bra005771
AT5G03570 (E=3e-212) ATIREG2 | ATIREG2 (IRON-REGULATED PROTEIN 2); nickel ion transmembrane transporter (490 aa)
           
  0.473
Bra008482
AT1G80320 (E=6e-168) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (331 aa)
   
          0.466
Bra040313
AT2G45400 (E=1e-147) BEN1 | BEN1; binding / catalytic/ coenzyme binding / oxidoreductase, acting on CH-OH group of donors (358 aa)
       
  0.444
Bra038342
AT1G09500 (E=4e-134) | cinnamyl-alcohol dehydrogenase family / CAD family (325 aa)
       
  0.444
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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