STRINGSTRING
Bra001477 protein (Brassica rapa) - STRING interaction network
"Bra001477" - AT3G12920 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001477AT3G12920 (E=2e-137) | protein binding / zinc ion binding (340 aa)    
Predicted Functional Partners:
Bra015086
AT3G24800 (E=2e-094) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (378 aa)
       
    0.919
Bra013241
AT3G24800 (E=4e-105) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (390 aa)
       
    0.919
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
       
    0.664
Bra038253
AT3G20060 (E=3e-097) UBC19 | UBC19 (ubiquitin-conjugating enzyme19); ubiquitin-protein ligase (181 aa)
     
    0.527
Bra035819
AT3G20060 (E=1e-098) UBC19 | UBC19 (ubiquitin-conjugating enzyme19); ubiquitin-protein ligase (181 aa)
     
    0.527
Bra030487
AT1G50490 (E=3e-092) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase (174 aa)
     
    0.527
Bra018852
AT1G50490 (E=1e-098) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase (181 aa)
     
    0.527
Bra014255
AT1G50490 (E=3e-061) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase (164 aa)
     
    0.527
Bra033420
AT5G03240 (E=8e-030) UBQ3 (71 aa)
       
    0.515
Bra038412
AT1G31170 (E=1e-041) ATSRX, SRX | SRX (SULFIREDOXIN); DNA binding / oxidoreductase, acting on sulfur group of donors (222 aa)
       
      0.503
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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