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Bra001481 protein (Brassica rapa) - STRING interaction network
"Bra001481" - AT3G12980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001481AT3G12980 (E=0.0) HAC5, ATHPCAT4 | HAC5; H3/H4 histone acetyltransferase/ histone acetyltransferase (1603 aa)    
Predicted Functional Partners:
Bra039916
AT2G18090 (E=6e-020) | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (144 aa)
     
  0.959
Bra002571
AT3G46520 (E=1e-217) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (605 aa)
       
  0.942
Bra015951
AT1G73960 (E=0.0) TAF2 | TAF2 (TBP-ASSOCIATED FACTOR 2); metallopeptidase/ zinc ion binding (1391 aa)
     
  0.919
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
  0.916
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.881
Bra025278
AT3G27460 (E=1e-122) | unknown protein (270 aa)
       
  0.879
Bra011293
AT4G31720 (E=7e-066) TAFII15, STG1 | TAFII15 (TBP-ASSOCIATED FACTOR II 15); RNA polymerase II transcription factor/ transcription factor (134 aa)
       
  0.875
Bra010224
AT4G31720 (E=2e-064) TAFII15, STG1 | TAFII15 (TBP-ASSOCIATED FACTOR II 15); RNA polymerase II transcription factor/ transcription factor (134 aa)
       
  0.875
Bra036534
AT5G25150 (E=0.0) TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (668 aa)
     
  0.852
Bra020485
AT5G25150 (E=0.0) TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (666 aa)
     
  0.852
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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