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Bra001489 protein (Brassica rapa) - STRING interaction network
"Bra001489" - AT3G13120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001489AT3G13120 (E=7e-072) | 30S ribosomal protein S10, chloroplast, putative (190 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra041145
ATCG01240 (E=2e-067) RPS7.2 | 30S chloroplast ribosomal protein S7 (156 aa)
 
  0.999
Bra035862
AT5G63070 (E=5e-061) | 40S ribosomal protein S15, putative (158 aa)
   
  0.999
Bra015299
AT1G04270 (E=1e-082) RPS15 | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome (152 aa)
   
  0.999
Bra015299.1-P
AT1G04270 (E=1e-082) RPS15 | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome (152 aa)
   
  0.999
Bra006024
AT5G09510 (E=2e-054) | 40S ribosomal protein S15 (RPS15D) (118 aa)
   
  0.999
Bra027914
AT3G53870 (E=7e-018) | 40S ribosomal protein S3 (RPS3B) (68 aa)
   
  0.999
Bra022859
AT3G53870 (E=1e-117) | 40S ribosomal protein S3 (RPS3B) (249 aa)
   
  0.999
Bra022851
AT3G53870 (E=1e-116) | 40S ribosomal protein S3 (RPS3B) (249 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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