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Bra001492 protein (Brassica rapa) - STRING interaction network
"Bra001492" - AT3G13160 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001492AT3G13160 (E=8e-175) | pentatricopeptide (PPR) repeat-containing protein (400 aa)    
Predicted Functional Partners:
Bra017662
AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (504 aa)
     
 
    0.923
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
 
    0.923
Bra011543
AT2G16370 (E=2e-257) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (499 aa)
     
 
    0.923
Bra000581
AT2G21550 (E=6e-203) | bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative (452 aa)
     
 
    0.923
Bra012894
AT3G50630 (E=2e-063) KRP2, ICK2 | KRP2 (KIP-RELATED PROTEIN 2); cyclin-dependent protein kinase inhibitor/ kinase inhibitor/ protein binding (212 aa)
       
      0.903
Bra040793
AT1G47210 (E=4e-170) CYCA3;2 | cyclin family protein (363 aa)
       
      0.613
Bra040792
AT1G47230 (E=6e-159) CYCA3;4 | cyclin, putative (364 aa)
       
      0.613
Bra040753
AT1G47210 (E=1e-171) CYCA3;2 | cyclin family protein (363 aa)
       
      0.613
Bra040710
AT1G47230 (E=2e-161) CYCA3;4 | cyclin, putative (371 aa)
       
      0.613
Bra033658
AT5G43080 (E=6e-153) CYCA3;1 | CYCA3;1 (Cyclin A3;1); cyclin-dependent protein kinase regulator (356 aa)
       
      0.613
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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