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Bra001496 protein (Brassica rapa) - STRING interaction network
"Bra001496" - AT3G13235 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001496AT3G13235 (E=2e-201) | ubiquitin family protein (492 aa)    
Predicted Functional Partners:
Bra028408
AT5G38470 (E=1e-140) | DNA repair protein RAD23, putative (382 aa)
       
 
  0.947
Bra028184
AT5G38470 (E=1e-134) | DNA repair protein RAD23, putative (378 aa)
       
 
  0.947
Bra026728
AT1G16190 (E=3e-161) | DNA repair protein RAD23, putative (359 aa)
       
 
  0.947
Bra026076
AT1G16190 (E=1e-149) | DNA repair protein RAD23, putative (369 aa)
       
 
  0.947
Bra008649
AT3G02540 (E=2e-024) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding (344 aa)
       
 
  0.947
Bra008648
AT3G02540 (E=8e-024) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding (627 aa)
       
 
  0.947
Bra008647
AT3G02540 (E=1e-019) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding (355 aa)
       
 
  0.947
Bra003599
AT1G79650 (E=3e-143) RAD23 | RAD23; damaged DNA binding (430 aa)
       
 
  0.947
Bra001050
AT3G02540 (E=7e-111) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding (401 aa)
       
 
  0.947
Bra037281
AT2G17200 (E=4e-207) | ubiquitin family protein (542 aa)
     
 
  0.863
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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