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Bra001497 protein (Brassica rapa) - STRING interaction network
"Bra001497" - AT3G13310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001497AT3G13310 (E=4e-059) | DNAJ heat shock N-terminal domain-containing protein (158 aa)    
Predicted Functional Partners:
Bra038496
AT4G16660 (E=0.0) | heat shock protein 70, putative / HSP70, putative (846 aa)
   
  0.987
Bra012696
AT4G16660 (E=0.0) | heat shock protein 70, putative / HSP70, putative (869 aa)
   
  0.987
Bra027370
AT3G14150 (E=2e-166) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (1001 aa)
   
  0.970
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
   
  0.970
Bra040656
AT4G08320 (E=1e-095) | tetratricopeptide repeat (TPR)-containing protein (392 aa)
   
  0.932
Bra041089
AT2G44440 (E=8e-039) | emsy N terminus domain-containing protein / ENT domain-containing protein (300 aa)
   
  0.928
Bra039679
AT1G79930 (E=0.0) HSP91 | HSP91; ATP binding (818 aa)
   
  0.927
Bra019840
AT1G11660 (E=0.0) | heat shock protein, putative (761 aa)
   
  0.927
Bra016825
AT1G11660 (E=7e-062) | heat shock protein, putative (255 aa)
   
  0.927
Bra014713
AT1G79920 (E=0.0) | ATP binding (814 aa)
   
  0.927
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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