STRINGSTRING
Bra001500 protein (Brassica rapa) - STRING interaction network
"Bra001500" - AT3G13330 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001500AT3G13330 (E=0.0) | binding (1806 aa)    
Predicted Functional Partners:
Bra034316
AT2G27020 (E=3e-124) PAG1 | PAG1; endopeptidase/ peptidase/ threonine-type endopeptidase (249 aa)
       
  0.981
Bra029375
AT5G23540 (E=8e-073) | 26S proteasome regulatory subunit, putative (249 aa)
       
  0.971
Bra009693
AT5G23540 (E=6e-165) | 26S proteasome regulatory subunit, putative (308 aa)
       
  0.971
Bra009693.1-P
AT5G23540 (E=6e-165) | 26S proteasome regulatory subunit, putative (308 aa)
       
  0.971
Bra003556
AT1G80210 (E=7e-144) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- male gametophyte; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Mov34/MPN/PAD-1 (InterPro-IPR000555); BEST Arabidopsis thaliana protein match is- mov34 family protein (TAIR-AT3G06820.2); Has 785 Blast hits to 706 proteins in 167 species- Archae - 0; Bacteria - 3; Metazoa - 423; Fungi - 147; Plants - 120; Viruses - 0; Other Eukaryotes - 92 (source- NCBI BLink). (377 aa)
       
  0.971
Bra016472
AT1G76010 (E=6e-061) | nucleic acid binding (645 aa)
       
  0.971
Bra015799
AT1G75990 (E=3e-224) | 26S proteasome regulatory subunit S3, putative (RPN3) (482 aa)
       
  0.971
Bra012219
AT1G76010 (E=1e-035) | nucleic acid binding (214 aa)
       
  0.971
Bra000537
AT2G26590 (E=5e-131) | adhesion regulating molecule family (304 aa)
       
  0.968
Bra033011
AT3G27430 (E=9e-153) PBB1 | PBB1; endopeptidase/ peptidase/ threonine-type endopeptidase ; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (273 aa)
       
  0.967
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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