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Bra001504 protein (Brassica rapa) - STRING interaction network
"Bra001504" - AT3G13400 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001504AT3G13400 (E=6e-308) sks13 | sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase (551 aa)    
Predicted Functional Partners:
Bra023954
AT4G32320 (E=6e-079) APX6 | APX6; L-ascorbate peroxidase/ heme binding / peroxidase (306 aa)
         
  0.890
Bra027670
AT1G63940 (E=1e-246) MDAR6 | monodehydroascorbate reductase, putative (483 aa)
         
  0.887
Bra033028
AT3G27820 (E=1e-223) ATMDAR4, MDAR4 | MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4); monodehydroascorbate reductase (NADH) (490 aa)
         
  0.885
Bra025303
AT3G27820 (E=2e-238) ATMDAR4, MDAR4 | MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4); monodehydroascorbate reductase (NADH) (487 aa)
         
  0.885
Bra006954
AT3G52880 (E=8e-224) ATMDAR1 | monodehydroascorbate reductase, putative (434 aa)
         
  0.883
Bra005775
AT5G03630 (E=1e-200) ATMDAR2 | ATMDAR2; monodehydroascorbate reductase (NADH) (435 aa)
         
  0.883
Bra037859
AT4G08390 (E=4e-147) SAPX | SAPX (STROMAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase (355 aa)
         
  0.883
Bra015668
AT1G77490 (E=2e-182) TAPX | TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase (440 aa)
         
  0.883
Bra017686
AT4G35000 (E=5e-144) APX3 | APX3 (ASCORBATE PEROXIDASE 3); L-ascorbate peroxidase (287 aa)
         
  0.882
Bra018100
AT3G47930 (E=2e-308) ATGLDH | ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE); L-gulono-1,4-lactone dehydrogenase/ galactonolactone dehydrogenase (601 aa)
         
  0.857
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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