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Bra001514 protein (Brassica rapa) - STRING interaction network
"Bra001514" - AT3G13620 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001514AT3G13620 (E=4e-250) | amino acid permease family protein (477 aa)    
Predicted Functional Partners:
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
     
 
  0.949
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
     
 
  0.949
Bra036881
AT4G25000 (E=2e-208) ATAMY1, AMY1 | AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase (388 aa)
     
  0.717
Bra016262
AT1G69830 (E=0.0) ATAMY3, AMY3 | AMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase (896 aa)
     
  0.717
Bra015784
AT1G76130 (E=3e-244) ATAMY2, AMY2 | AMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase/ calcium ion binding / catalytic/ cation binding (413 aa)
     
  0.717
Bra023651
AT5G17990 (E=2e-128) TRP1, pat1 | TRP1 (tryptophan biosynthesis 1); anthranilate phosphoribosyltransferase (412 aa)
       
 
  0.623
Bra007925
AT1G70570 (E=1e-307) | anthranilate phosphoribosyltransferase, putative (597 aa)
       
 
  0.623
Bra002119
AT5G17990 (E=1e-192) TRP1, pat1 | TRP1 (tryptophan biosynthesis 1); anthranilate phosphoribosyltransferase (429 aa)
       
 
  0.623
Bra001693
AT3G17980 (E=5e-081) | C2 domain-containing protein (177 aa)
           
  0.583
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
         
  0.554
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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