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Bra001530 protein (Brassica rapa) - STRING interaction network
"Bra001530" - AT3G13920 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001530AT3G13920 (E=2e-232) EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor (416 aa)    
Predicted Functional Partners:
Bra020407
AT5G57870 (E=0.0) | eukaryotic translation initiation factor 4F, putative / eIF-4F, putative (770 aa)
     
  0.994
Bra032668
AT1G02140 (E=4e-066) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding (266 aa)
     
  0.976
Bra033217
AT1G02140 (E=6e-050) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding (102 aa)
     
  0.976
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
   
  0.975
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
   
  0.975
Bra011218
AT2G24050 (E=8e-107) | MIF4G domain-containing protein / MA3 domain-containing protein (547 aa)
     
  0.974
Bra010275
AT4G30770 (E=5e-060) | unknown protein (445 aa)
     
  0.974
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
     
  0.973
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
   
  0.963
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.958
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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