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Bra001534 protein (Brassica rapa) - STRING interaction network
"Bra001534" - AT3G14080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001534AT3G14080 (E=9e-067) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (128 aa)    
Predicted Functional Partners:
Bra030529
AT1G03330 (E=2e-047) | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative (93 aa)
     
  0.987
Bra025138
AT2G03870 (E=4e-045) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (247 aa)
     
  0.987
Bra015717
AT1G76860 (E=2e-046) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (97 aa)
     
  0.983
Bra008283
AT1G76860 (E=8e-047) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (97 aa)
     
  0.983
Bra003705
AT1G76860 (E=2e-047) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (97 aa)
     
  0.983
Bra036157
AT5G48870 (E=9e-041) SAD1 | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1); RNA binding (89 aa)
     
  0.983
Bra020674
AT5G48870 (E=4e-041) SAD1 | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1); RNA binding (89 aa)
     
  0.983
Bra009946
AT5G27720 (E=9e-051) emb1644 | emb1644 (embryo defective 1644) (129 aa)
     
  0.981
Bra009946.1-P
AT5G27720 (E=9e-051) emb1644 | emb1644 (embryo defective 1644) (129 aa)
     
  0.981
Bra014525
AT3G59810 (E=6e-042) | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative (92 aa)
     
  0.981
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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