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Bra001535 protein (Brassica rapa) - STRING interaction network
"Bra001535" - AT3G14110 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001535AT3G14110 (E=2e-082) FLU | FLU (FLUORESCENT IN BLUE LIGHT); binding (289 aa)    
Predicted Functional Partners:
Bra035447
AT1G58290 (E=1e-242) HEMA1 | HEMA1; glutamyl-tRNA reductase (528 aa)
     
 
  0.914
Bra027877
AT1G58290 (E=2e-250) HEMA1 | HEMA1; glutamyl-tRNA reductase (532 aa)
     
 
  0.914
Bra033776
AT1G09940 (E=1e-183) HEMA2 | HEMA2; glutamyl-tRNA reductase (525 aa)
     
 
  0.902
Bra031690
AT1G09940 (E=1e-218) HEMA2 | HEMA2; glutamyl-tRNA reductase (527 aa)
     
 
  0.902
Bra019789
AT1G09940 (E=2e-184) HEMA2 | HEMA2; glutamyl-tRNA reductase (565 aa)
     
 
  0.902
Bra031261
AT3G21200 (E=2e-154) | unknown protein (310 aa)
     
      0.729
Bra023897
AT3G21200 (E=1e-160) | unknown protein (322 aa)
     
      0.729
Bra007284
AT3G56940 (E=4e-212) CRD1, CHL27, ACSF | CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (837 aa)
     
 
  0.541
Bra003256
AT3G56940 (E=3e-217) CRD1, CHL27, ACSF | CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (409 aa)
     
 
  0.541
Bra015908
AT1G74470 (E=1e-235) | geranylgeranyl reductase (466 aa)
     
      0.533
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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