STRINGSTRING
Bra001536 protein (Brassica rapa) - STRING interaction network
"Bra001536" - AT3G14150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001536AT3G14150 (E=6e-180) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (361 aa)    
Predicted Functional Partners:
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
         
  0.900
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
         
  0.900
Bra035498
AT1G12550 (E=1e-036) | oxidoreductase family protein (98 aa)
   
 
  0.822
Bra035206
AT1G79870 (E=1e-148) | oxidoreductase family protein (310 aa)
   
 
  0.822
Bra026967
AT1G12550 (E=3e-059) | oxidoreductase family protein (397 aa)
   
 
  0.822
Bra026966
AT1G12550 (E=8e-086) | oxidoreductase family protein (239 aa)
   
 
  0.822
Bra023487
AT5G14780 (E=1e-198) FDH | FDH (FORMATE DEHYDROGENASE); NAD or NADH binding / binding / catalytic/ cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (384 aa)
   
 
  0.822
Bra019774
AT1G12550 (E=1e-072) | oxidoreductase family protein (345 aa)
   
 
  0.822
Bra008737
AT5G14780 (E=6e-204) FDH | FDH (FORMATE DEHYDROGENASE); NAD or NADH binding / binding / catalytic/ cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (384 aa)
   
 
  0.822
Bra004275
AT1G68010 (E=9e-208) HPR | HPR; glycerate dehydrogenase/ poly(U) binding (386 aa)
   
 
  0.822
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (16%) [HD]