STRINGSTRING
Bra001537 protein (Brassica rapa) - STRING interaction network
"Bra001537" - AT3G14172 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001537AT3G14172 (E=5e-233) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- COP1-interacting protein-related (TAIR-AT1G72410.1); Has 2665 Blast hits to 1956 proteins in 215 species- Archae - 2; Bacteria - 189; Metazoa - 878; Fungi - 141; Plants - 132; Viruses - 5; Other Eukaryotes - 1318 (source- NCBI BLink). (1157 aa)    
Predicted Functional Partners:
Bra014429
AT3G61590 (E=1e-186) HWS, HS | HWS (HAWAIIAN SKIRT); ubiquitin-protein ligase (421 aa)
           
  0.465
Bra007616
AT3G61590 (E=6e-184) HWS, HS | HWS (HAWAIIAN SKIRT); ubiquitin-protein ligase (404 aa)
           
  0.465
Bra003458
AT3G61590 (E=1e-196) HWS, HS | HWS (HAWAIIAN SKIRT); ubiquitin-protein ligase (408 aa)
           
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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