STRINGSTRING
Bra001538 protein (Brassica rapa) - STRING interaction network
"Bra001538" - AT3G14190 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001538AT3G14190 (E=5e-078) | unknown protein (223 aa)    
Predicted Functional Partners:
Bra008892
AT5G12380 (E=4e-159) | annexin, putative (315 aa)
           
  0.459
Bra011430
AT4G33270 (E=1e-249) CDC20.1 | CDC20.1; signal transducer (715 aa)
     
 
  0.407
Bra034072
AT3G09520 (E=6e-236) ATEXO70H4 | ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding (608 aa)
           
  0.403
Bra029772
AT3G09520 (E=5e-250) ATEXO70H4 | ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding (614 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]