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Bra001545 protein (Brassica rapa) - STRING interaction network
"Bra001545" - AT3G14270 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001545AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1767 aa)    
Predicted Functional Partners:
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
   
  0.997
Bra018361
AT5G20720 (E=1e-032) CPN20, CPN10, CHCPN10, ATCPN21, CPN21 | CPN20 (CHAPERONIN 20); calmodulin binding (120 aa)
   
 
  0.994
Bra037640
AT2G44650 (E=1e-053) CHL-CPN10, CPN10 | CHL-CPN10 (CHLOROPLAST CHAPERONIN 10); chaperone binding (139 aa)
   
 
  0.994
Bra026789
AT1G14980 (E=6e-050) CPN10 | CPN10 (CHAPERONIN 10); chaperone binding (98 aa)
   
 
  0.994
Bra026173
AT1G14980 (E=4e-039) CPN10 | CPN10 (CHAPERONIN 10); chaperone binding (137 aa)
   
 
  0.994
Bra024563
AT1G23100 (E=3e-038) | 10 kDa chaperonin, putative (87 aa)
   
 
  0.994
Bra020124
AT5G20720 (E=8e-121) CPN20, CPN10, CHCPN10, ATCPN21, CPN21 | CPN20 (CHAPERONIN 20); calmodulin binding (253 aa)
   
 
  0.994
Bra018361.1-P
AT5G20720 (E=1e-032) CPN20, CPN10, CHCPN10, ATCPN21, CPN21 | CPN20 (CHAPERONIN 20); calmodulin binding (120 aa)
   
 
  0.994
Bra016677
AT1G14980 (E=3e-050) CPN10 | CPN10 (CHAPERONIN 10); chaperone binding (98 aa)
   
 
  0.994
Bra006572
AT5G20720 (E=9e-123) CPN20, CPN10, CHCPN10, ATCPN21, CPN21 | CPN20 (CHAPERONIN 20); calmodulin binding (253 aa)
   
 
  0.994
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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