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Bra001556 protein (Brassica rapa) - STRING interaction network
"Bra001556" - AT3G29430 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001556AT3G29430 (E=2e-164) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (358 aa)    
Predicted Functional Partners:
Bra019283
AT4G23660 (E=4e-138) AtPPT1 | AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1); 4-hydroxybenzoate nonaprenyltransferase (436 aa)
   
 
  0.862
Bra013720
AT4G23660 (E=6e-152) AtPPT1 | AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1); 4-hydroxybenzoate nonaprenyltransferase (411 aa)
   
 
  0.862
Bra010540
AT4G23660 (E=1e-070) AtPPT1 | AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1); 4-hydroxybenzoate nonaprenyltransferase (185 aa)
   
 
  0.862
Bra036264
AT5G17230 (E=8e-014) PSY | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase (59 aa)
   
  0.856
Bra034641
AT4G34640 (E=1e-156) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (441 aa)
   
  0.856
Bra023603
AT5G17230 (E=5e-191) PSY | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase (416 aa)
   
  0.856
Bra017668
AT4G34650 (E=8e-107) SQS2 | SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase (243 aa)
   
  0.856
Bra017667
AT4G34640 (E=2e-157) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (387 aa)
   
  0.856
Bra011549
AT4G34650 (E=9e-194) SQS2 | SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase (418 aa)
   
  0.856
Bra011548
AT4G34640 (E=4e-159) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (398 aa)
   
  0.856
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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