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Bra001557 protein (Brassica rapa) - STRING interaction network
"Bra001557" - AT3G14490 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001557AT3G14490 (E=2e-279) | terpene synthase/cyclase family protein (604 aa)    
Predicted Functional Partners:
Bra022156
AT5G47770 (E=6e-190) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (342 aa)
         
  0.601
Bra020354
AT5G58770 (E=4e-140) | dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative (306 aa)
         
  0.595
Bra002619
AT5G58770 (E=1e-129) | dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative (305 aa)
         
  0.595
Bra024508
AT2G17570 (E=4e-085) | undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein (263 aa)
         
  0.593
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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