STRINGSTRING
Bra001569 protein (Brassica rapa) - STRING interaction network
"Bra001569" - AT3G14850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001569AT3G14850 (E=1e-176) | unknown protein (353 aa)    
Predicted Functional Partners:
Bra039672
AT1G53450 (E=3e-200) | unknown protein (448 aa)
           
  0.541
Bra027308
AT3G14830 (E=3e-190) | unknown protein (459 aa)
           
  0.541
Bra001570
AT3G14860 (E=6e-202) | NHL repeat-containing protein (493 aa)
           
  0.541
Bra027324
AT3G14610 (E=1e-262) CYP72A7 | CYP72A7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (550 aa)
           
  0.483
Bra039667
AT1G53380 (E=3e-196) | unknown protein (452 aa)
           
  0.483
Bra032302
AT1G29300 (E=3e-175) UNE1 | UNE1 (unfertilized embryo sac 1) (449 aa)
           
  0.483
Bra027298
AT3G14870 (E=6e-182) | unknown protein (430 aa)
           
  0.483
Bra010837
AT1G29300 (E=6e-168) UNE1 | UNE1 (unfertilized embryo sac 1) (430 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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