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Bra001572 protein (Brassica rapa) - STRING interaction network
"Bra001572" - AT3G14890 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001572AT3G14890 (E=7e-126) | phosphoesterase (460 aa)    
Predicted Functional Partners:
Bra008474
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1274 aa)
     
  0.981
Bra018434
AT1G10520 (E=3e-240) | DNA polymerase lambda (POLL) (524 aa)
     
  0.980
Bra028243
AT4G26900 (E=1e-277) AT-HF, HISN4 | AT-HF (HIS HF); imidazoleglycerol-phosphate synthase (585 aa)
   
 
  0.977
Bra026393
AT4G26900 (E=2e-166) AT-HF, HISN4 | AT-HF (HIS HF); imidazoleglycerol-phosphate synthase (581 aa)
   
 
  0.977
Bra026012
AT1G16970 (E=1e-299) KU70, ATKU70 | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding (577 aa)
       
  0.964
Bra014100
AT1G48050 (E=0.0) KU80, ATKU80 | KU80; double-stranded DNA binding / protein binding ; Single-stranded DNA-dependent ATP-dependent helicase (682 aa)
     
  0.961
Bra018061
AT3G48425 (E=6e-195) | endonuclease/exonuclease/phosphatase family protein (358 aa)
   
  0.940
Bra016932
AT2G41460 (E=2e-153) ARP | ARP; DNA-(apurinic or apyrimidinic site) lyase (482 aa)
   
  0.940
Bra011657
AT4G36050 (E=1e-207) | endonuclease/exonuclease/phosphatase family protein (558 aa)
   
  0.940
Bra009442
AT5G04560 (E=6e-263) DME | DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase (1926 aa)
       
 
  0.938
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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