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Bra001579 protein (Brassica rapa) - STRING interaction network
"Bra001579" - AT3G15030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001579AT3G15030 (E=2e-141) TCP4, MEE35 | TCP4 (TCP family transcription factor 4); transcription factor (407 aa)    
Predicted Functional Partners:
Bra013289
AT4G18170 (E=1e-121) WRKY28, ATWRKY28 | WRKY28; transcription factor (308 aa)
       
      0.607
Bra012614
AT4G18170 (E=3e-138) WRKY28, ATWRKY28 | WRKY28; transcription factor (312 aa)
       
      0.607
Bra000638
AT4G08150 (E=9e-163) KNAT1, BP, BP1 | KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor (387 aa)
           
  0.545
Bra004929
AT2G45680 (E=6e-098) | TCP family transcription factor, putative (324 aa)
           
  0.483
Bra018126
AT3G47620 (E=2e-126) AtTCP14 | AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14); transcription factor (466 aa)
       
 
  0.449
Bra035532
AT5G35550 (E=1e-098) TT2, ATMYB123, MYB123, ATTT2 | TT2 (TRANSPARENT TESTA 2); DNA binding / transcription factor (260 aa)
       
      0.448
Bra016164
AT1G71030 (E=9e-065) ATMYBL2, MYBL2 | MYBL2 (ARABIDOPSIS MYB-LIKE 2); DNA binding / transcription factor (196 aa)
       
      0.448
Bra001917
AT1G66390 (E=5e-110) ATMYB90, PAP2, MYB90 | MYB90 (MYB DOMAIN PROTEIN 90); DNA binding / transcription factor (249 aa)
       
      0.448
Bra000453
AT2G47460 (E=7e-141) MYB12, ATMYB12, PFG1 | MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor (376 aa)
       
      0.448
Bra004407
AT1G69690 (E=2e-098) | TCP family transcription factor, putative (321 aa)
       
 
  0.446
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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