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Bra001586 protein (Brassica rapa) - STRING interaction network
"Bra001586" - AT3G15170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001586AT3G15170 (E=6e-124) CUC1, anac054, ATNAC1 | CUC1 (CUP-SHAPED COTYLEDON1); transcription factor (309 aa)    
Predicted Functional Partners:
Bra027050
AT1G62360 (E=9e-163) STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT MERISTEMLESS); transcription factor (382 aa)
           
  0.552
Bra039894
AT2G17950 (E=2e-113) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (302 aa)
           
  0.499
Bra037245
AT2G17950 (E=2e-100) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (311 aa)
           
  0.499
Bra024485
AT2G17950 (E=9e-112) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (294 aa)
           
  0.499
Bra015983
AT1G73590 (E=1e-313) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter ; May act as a component of the auxin efflux carrier (618 aa)
           
  0.476
Bra008105
AT1G73590 (E=0.0) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter ; May act as a component of the auxin efflux carrier (616 aa)
           
  0.476
Bra039733
AT1G65620 (E=9e-109) AS2 | AS2 (ASYMMETRIC LEAVES 2); protein binding (202 aa)
           
  0.475
Bra004312
AT1G68480 (E=1e-073) JAG | JAG (JAGGED); nucleic acid binding / transcription factor/ zinc ion binding (251 aa)
           
  0.472
Bra000638
AT4G08150 (E=9e-163) KNAT1, BP, BP1 | KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor (387 aa)
           
  0.456
Bra005177
AT2G37630 (E=1e-161) ATPHAN, AS1, ATMYB91, MYB91 | AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor (361 aa)
           
  0.453
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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