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Bra001587 protein (Brassica rapa) - STRING interaction network
"Bra001587" - AT3G15190 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001587AT3G15190 (E=9e-058) | chloroplast 30S ribosomal protein S20, putative (201 aa)    
Predicted Functional Partners:
Bra021853
AT2G33450 (E=9e-064) | 50S ribosomal protein L28, chloroplast (CL28) (142 aa)
     
   
  0.823
Bra008678
AT5G15760 (E=6e-074) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (179 aa)
   
        0.802
Bra004323
AT1G68590 (E=1e-067) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (168 aa)
   
        0.796
Bra004027
AT1G68590 (E=3e-066) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (160 aa)
   
        0.796
Bra015574
AT1G07320 (E=3e-118) RPL4 | RPL4; poly(U) binding / structural constituent of ribosome (283 aa)
     
   
  0.749
Bra037609
AT3G44890 (E=1e-074) RPL9 | RPL9 (RIBOSOMAL PROTEIN L9); structural constituent of ribosome (196 aa)
     
   
  0.748
Bra000285
AT2G43030 (E=4e-114) | ribosomal protein L3 family protein (266 aa)
     
        0.747
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
     
   
  0.745
Bra003176
AT3G54210 (E=2e-093) | ribosomal protein L17 family protein (208 aa)
     
   
  0.745
Bra008766
AT5G14320 (E=1e-081) | 30S ribosomal protein S13, chloroplast (CS13) (169 aa)
     
        0.740
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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