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Bra001591 protein (Brassica rapa) - STRING interaction network
"Bra001591" - AT3G15355 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001591AT3G15355 (E=4e-137) UBC25, PFU1 | UBC25 (UBIQUITIN-CONJUGATING ENZYME 25); small conjugating protein ligase (539 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
 
    0.636
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
 
    0.636
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
 
    0.636
Bra021653
AT2G30600 (E=0.0) | BTB/POZ domain-containing protein (799 aa)
     
  0.584
Bra005836
AT5G05080 (E=5e-118) UBC22 | UBC22 (ubiquitin-conjugating enzyme 22); ubiquitin-protein ligase (319 aa)
       
  0.531
Bra011359
AT4G32600 (E=9e-175) | zinc finger (C3HC4-type RING finger) family protein (417 aa)
     
  0.516
Bra008475
AT1G80400 (E=3e-144) | zinc finger (C3HC4-type RING finger) family protein (405 aa)
     
  0.516
Bra031231
AT2G22120 (E=2e-160) | protein binding / zinc ion binding (323 aa)
     
   
  0.475
Bra030264
AT2G22120 (E=2e-160) | protein binding / zinc ion binding (323 aa)
     
   
  0.475
Bra040966
AT1G12760 (E=2e-117) | protein binding / ubiquitin-protein ligase/ zinc ion binding (411 aa)
     
  0.454
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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