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Bra001607 protein (Brassica rapa) - STRING interaction network
"Bra001607" - AT3G15820 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001607AT3G15820 (E=1e-115) | phosphatidic acid phosphatase-related / PAP2-related (280 aa)    
Predicted Functional Partners:
Bra008812
AT5G13640 (E=0.0) ATPDAT, PDAT | ATPDAT; phosphatidylcholine-sterol O-acyltransferase (666 aa)
           
  0.540
Bra019778
AT1G12640 (E=3e-244) | membrane bound O-acyl transferase (MBOAT) family protein (466 aa)
           
  0.505
Bra027001
AT1G63050 (E=6e-242) | membrane bound O-acyl transferase (MBOAT) family protein (467 aa)
           
  0.504
Bra038905
AT3G51520 (E=8e-135) | diacylglycerol acyltransferase family (318 aa)
           
  0.501
Bra036722
AT2G19450 (E=1e-250) TAG1, AS11, ABX45, DGAT1, RDS1, ATDGAT | TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1); diacylglycerol O-acyltransferase (503 aa)
           
  0.478
Bra011598
AT5G60620 (E=5e-213) | phospholipid/glycerol acyltransferase family protein (376 aa)
           
  0.474
Bra034777
AT3G12120 (E=2e-215) FAD2 | FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase (384 aa)
           
  0.455
Bra008694
AT5G15530 (E=1e-070) BCCP2, CAC1-B | BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding (257 aa)
           
  0.449
Bra006305
AT5G15530 (E=2e-078) BCCP2, CAC1-B | BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding (254 aa)
           
  0.449
Bra039003
AT2G19450 (E=1e-241) TAG1, AS11, ABX45, DGAT1, RDS1, ATDGAT | TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1); diacylglycerol O-acyltransferase (497 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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