STRINGSTRING
Bra001618 protein (Brassica rapa) - STRING interaction network
"Bra001618" - AT3G16000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001618AT3G16000 (E=5e-205) MFP1 | MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1); DNA binding (723 aa)    
Predicted Functional Partners:
Bra031473
AT2G35630 (E=2e-020) MOR1, GEM1 | MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding (133 aa)
       
 
  0.631
Bra023018
AT2G35630 (E=0.0) MOR1, GEM1 | MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding (1960 aa)
       
 
  0.631
Bra005318
AT2G35630 (E=0.0) MOR1, GEM1 | MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding (1984 aa)
       
 
  0.631
Bra032577
AT1G02970 (E=4e-218) WEE1, ATWEE1 | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG); kinase/ protein kinase (455 aa)
       
      0.623
Bra030517
AT1G02970 (E=6e-151) WEE1, ATWEE1 | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG); kinase/ protein kinase (933 aa)
       
      0.623
Bra032990
AT5G28740 (E=2e-029) | transcription-coupled DNA repair protein-related (317 aa)
       
      0.617
Bra027126
AT5G28740 (E=2e-028) | transcription-coupled DNA repair protein-related (154 aa)
       
      0.617
Bra020619
AT5G28740 (E=0.0) | transcription-coupled DNA repair protein-related (913 aa)
       
      0.617
Bra010008
AT5G28740 (E=1e-029) | transcription-coupled DNA repair protein-related (259 aa)
       
      0.617
Bra003036
AT5G28740 (E=3e-019) | transcription-coupled DNA repair protein-related (167 aa)
       
      0.617
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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