STRINGSTRING
Bra001623 protein (Brassica rapa) - STRING interaction network
"Bra001623" - AT2G16005 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001623AT2G16005 (E=8e-025) | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (142 aa)    
Predicted Functional Partners:
Bra037861
AT4G08520 (E=6e-051) | clathrin adaptor complex small chain family protein (138 aa)
           
  0.465
Bra029790
AT3G09800 (E=1e-071) | protein binding (147 aa)
           
  0.465
Bra027107
AT1G60970 (E=3e-088) | clathrin adaptor complex small chain family protein (177 aa)
           
  0.465
Bra001298
AT3G09800 (E=1e-091) | protein binding (184 aa)
           
  0.465
Bra038026
AT1G55900 (E=1e-016) TIM50, emb1860 | TIM50 (160 aa)
           
  0.424
Bra037095
AT1G55900 (E=2e-122) TIM50, emb1860 | TIM50 (355 aa)
           
  0.424
Bra030827
AT1G55900 (E=2e-145) TIM50, emb1860 | TIM50 (372 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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