STRINGSTRING
Bra001635 protein (Brassica rapa) - STRING interaction network
"Bra001635" - AT3G16510 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001635AT3G16510 (E=7e-095) | C2 domain-containing protein (405 aa)    
Predicted Functional Partners:
Bra040837
AT4G27890 (E=2e-102) | nuclear movement family protein (290 aa)
           
  0.483
Bra031806
AT5G66180 (E=1e-188) | LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro-IPR001678); BEST Arabidopsis thaliana protein match is- NOL1/NOP2/sun family protein (TAIR-AT1G06560.1); Has 5021 Blast hits to 4182 proteins in 1157 species- Archae - 270; Bacteria - 3133; Metazoa - 499; Fungi - 156; Plants - 103; Viruses - 0; Other Eukaryotes - 860 (source- NCBI BLink). (387 aa)
           
  0.483
Bra029071
AT5G53400 (E=1e-096) | nuclear movement family protein (284 aa)
           
  0.483
Bra026300
AT4G27890 (E=2e-106) | nuclear movement family protein (289 aa)
           
  0.483
Bra022654
AT5G53400 (E=3e-091) | nuclear movement family protein (278 aa)
           
  0.483
Bra003059
AT5G53400 (E=2e-097) | nuclear movement family protein (279 aa)
           
  0.483
Bra024958
AT5G47180 (E=3e-090) | vesicle-associated membrane family protein / VAMP family protein (218 aa)
           
  0.426
Bra022110
AT5G47180 (E=6e-101) | vesicle-associated membrane family protein / VAMP family protein (218 aa)
           
  0.426
Bra000978
AT4G00170 (E=2e-086) | vesicle-associated membrane family protein / VAMP family protein (236 aa)
           
  0.426
Bra020765
AT3G06200 (E=5e-104) | guanylate kinase, putative (233 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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