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Bra001637 protein (Brassica rapa) - STRING interaction network
"Bra001637" - AT3G16640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001637AT3G16640 (E=4e-075) TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (168 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
        0.988
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
   
  0.977
Bra014721
AT3G55770 (E=6e-101) | LIM domain-containing protein (311 aa)
     
      0.972
Bra024577
AT1G23290 (E=6e-029) RPL27A, RPL27AB | RPL27AB; structural constituent of ribosome (117 aa)
     
   
  0.970
Bra016354
AT1G23290 (E=3e-074) RPL27A, RPL27AB | RPL27AB; structural constituent of ribosome (147 aa)
     
   
  0.970
Bra012370
AT1G23290 (E=5e-080) RPL27A, RPL27AB | RPL27AB; structural constituent of ribosome (156 aa)
     
   
  0.970
Bra007929
AT1G70600 (E=5e-081) | structural constituent of ribosome (146 aa)
     
   
  0.970
Bra003951
AT1G70600 (E=1e-083) | structural constituent of ribosome (146 aa)
     
   
  0.970
Bra039013
AT2G19720 (E=4e-068) rps15ab | rps15ab (ribosomal protein S15A B); structural constituent of ribosome (129 aa)
     
   
  0.969
Bra038265
AT3G46060 (E=2e-090) ARA3 | ATRAB8A; GTP binding (376 aa)
     
   
  0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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