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Bra001640 protein (Brassica rapa) - STRING interaction network
"Bra001640" - AT3G16770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001640AT3G16770 (E=5e-098) RAP2.3, ATEBP, ERF72 | ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN); DNA binding / protein binding / transcription activator/ transcription factor (245 aa)    
Predicted Functional Partners:
Bra028876
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1967 aa)
           
  0.514
Bra009598
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1985 aa)
           
  0.514
Bra005717
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1849 aa)
           
  0.514
Bra015693
AT1G77120 (E=1e-200) ADH1, ADH, ATADH, ATADH1 | ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase (379 aa)
     
   
  0.438
Bra005430
AT2G34390 (E=3e-114) NIP2;1, NLM4 | NIP2;1 (NOD26-LIKE INTRINSIC PROTEIN 2;1); lactate transmembrane transporter/ water channel (287 aa)
     
   
  0.417
Bra005428
AT2G34390 (E=4e-121) NIP2;1, NLM4 | NIP2;1 (NOD26-LIKE INTRINSIC PROTEIN 2;1); lactate transmembrane transporter/ water channel (286 aa)
     
   
  0.417
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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