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Bra001645 protein (Brassica rapa) - STRING interaction network
"Bra001645" - AT3G16950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001645AT3G16950 (E=4e-292) LPD1, ptlpd1 | LPD1 (LIPOAMIDE DEHYDROGENASE 1); dihydrolipoyl dehydrogenase (618 aa)    
Predicted Functional Partners:
Bra035715
AT5G50850 (E=4e-182) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (453 aa)
   
  0.999
Bra022757
AT5G50850 (E=2e-186) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (367 aa)
   
  0.999
Bra022529
AT5G50850 (E=2e-186) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (366 aa)
   
  0.999
Bra010796
AT1G30120 (E=9e-196) PDH-E1 BETA | PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) (403 aa)
   
  0.999
Bra028992
AT5G55070 (E=5e-210) | 2-oxoacid dehydrogenase family protein (494 aa)
   
  0.999
Bra002934
AT5G55070 (E=7e-198) | 2-oxoacid dehydrogenase family protein (466 aa)
   
  0.999
Bra017345
AT3G25860 (E=8e-180) LTA2, PLE2 | LTA2; dihydrolipoyllysine-residue acetyltransferase (479 aa)
  0.998
Bra025167
AT3G25860 (E=5e-175) LTA2, PLE2 | LTA2; dihydrolipoyllysine-residue acetyltransferase (477 aa)
  0.998
Bra028057
AT1G34430 (E=4e-165) EMB3003 | EMB3003 (embryo defective 3003); acyltransferase/ dihydrolipoyllysine-residue acetyltransferase/ protein binding (455 aa)
  0.998
Bra033446
AT3G52200 (E=1e-283) LTA3 | LTA3; ATP binding / dihydrolipoyllysine-residue acetyltransferase (641 aa)
 
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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