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Bra001646 protein (Brassica rapa) - STRING interaction network
"Bra001646" - AT3G16990 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001646AT3G16990 (E=2e-104) | TENA/THI-4 family protein (214 aa)    
Predicted Functional Partners:
Bra024550
AT1G22940 (E=3e-253) TH1, TH-1, THIE | TH1 (THIAMINE REQUIRING 1); hydroxymethylpyrimidine kinase/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase (526 aa)
   
  0.972
Bra015014
AT3G24030 (E=1e-124) | hydroxyethylthiazole kinase family protein (273 aa)
   
 
  0.768
Bra028973
AT5G55550 (E=2e-192) | RNA recognition motif (RRM)-containing protein (433 aa)
           
  0.541
Bra013629
AT4G22600 (E=1e-116) | unknown protein (274 aa)
           
  0.540
Bra014938
AT3G23325 (E=3e-046) | splicing factor, putative (87 aa)
           
  0.457
Bra017133
AT2G38180 (E=1e-119) | GDSL-motif lipase/hydrolase family protein (687 aa)
         
  0.429
Bra013741
AT4G23890 (E=1e-107) | unknown protein (242 aa)
   
          0.416
Bra019259
AT4G23890 (E=4e-114) | unknown protein (243 aa)
   
          0.413
Bra023278
AT1G32560 (E=2e-042) | late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein (133 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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