STRINGSTRING
Bra001648 protein (Brassica rapa) - STRING interaction network
"Bra001648" - AT3G17010 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001648AT3G17010 (E=6e-076) | transcriptional factor B3 family protein (299 aa)    
Predicted Functional Partners:
Bra020417
AT5G57720 (E=4e-087) | transcriptional factor B3 family protein (290 aa)
     
   
  0.446
Bra034158
AT3G11000 (E=2e-102) | EXPRESSED IN- 9 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Development and cell death domain (InterPro-IPR013989), Kelch related (InterPro-IPR013089); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G01660.1). (450 aa)
           
  0.418
Bra015611
AT1G47610 (E=3e-169) | transducin family protein / WD-40 repeat family protein (363 aa)
           
  0.418
Bra039477
AT3G04960 (E=3e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G27980.1); Has 17810 Blast hits to 12112 proteins in 728 species- Archae - 198; Bacteria - 1231; Metazoa - 8565; Fungi - 1136; Plants - 665; Viruses - 38; Other Eukaryotes - 5977 (source- NCBI BLink). (538 aa)
           
  0.406
Bra039461
AT3G04960 (E=2e-066) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G27980.1); Has 17810 Blast hits to 12112 proteins in 728 species- Archae - 198; Bacteria - 1231; Metazoa - 8565; Fungi - 1136; Plants - 665; Viruses - 38; Other Eukaryotes - 5977 (source- NCBI BLink). (533 aa)
           
  0.406
Bra032844
AT1G27710 (E=1e-009) | glycine-rich protein (150 aa)
           
  0.406
Bra030060
AT1G27710 (E=7e-011) | glycine-rich protein (162 aa)
           
  0.406
Bra008921
AT5G12000 (E=2e-297) | kinase (698 aa)
           
  0.406
Bra000208
AT2G40850 (E=2e-249) | phosphatidylinositol 3- and 4-kinase family protein (529 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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