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Bra001649 protein (Brassica rapa) - STRING interaction network
"Bra001649" - AT3G17020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001649AT3G17020 (E=1e-072) | universal stress protein (USP) family protein (163 aa)    
Predicted Functional Partners:
Bra000803
AT4G04670 (E=0.0) | Met-10+ like family protein / kelch repeat-containing protein (987 aa)
           
  0.528
Bra002620
AT5G58750 (E=1e-201) | wound-responsive protein-related (386 aa)
           
  0.505
Bra013910
AT4G25680 (E=3e-117) | unknown protein (251 aa)
           
  0.451
Bra010452
AT4G25680 (E=9e-128) | unknown protein (254 aa)
           
  0.451
Bra011947
AT2G28450 (E=0.0) | zinc finger (CCCH-type) family protein (785 aa)
           
  0.422
Bra024897
AT2G01210 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (710 aa)
           
  0.418
Bra040802
AT4G13450 (E=9e-083) | universal stress protein (USP) family protein (220 aa)
           
  0.406
Bra038129
AT1G53590 (E=0.0) NTMC2TYPE6.1, NTMC2T6.1 | NTMC2T6.1 (763 aa)
           
  0.406
Bra036793
AT3G51510 (E=3e-065) | unknown protein (186 aa)
           
  0.406
Bra036356
AT3G25930 (E=5e-060) | universal stress protein (USP) family protein (150 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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