STRINGSTRING
Bra001654 protein (Brassica rapa) - STRING interaction network
"Bra001654" - AT3G17120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001654AT3G17120 (E=3e-063) | unknown protein (211 aa)    
Predicted Functional Partners:
Bra038760
AT4G21720 (E=5e-054) | unknown protein (137 aa)
           
  0.587
Bra020758
AT3G06330 (E=8e-169) | zinc finger (C3HC4-type RING finger) family protein (443 aa)
           
  0.587
Bra013551
AT4G21720 (E=1e-052) | unknown protein (136 aa)
           
  0.587
Bra001193
AT3G06330 (E=9e-151) | zinc finger (C3HC4-type RING finger) family protein (436 aa)
           
  0.587
Bra024412
AT5G65685 (E=4e-171) | soluble glycogen synthase-related (593 aa)
           
  0.548
Bra027399
AT3G13782 (E=2e-103) NFA04, NAP1;4, NFA4 | NAP1;4 (NUCLEOSOME ASSEMBLY PROTEIN1;4); DNA binding / chromatin binding (276 aa)
           
  0.537
Bra040226
AT3G06330 (E=7e-143) | zinc finger (C3HC4-type RING finger) family protein (421 aa)
           
  0.526
Bra033998
AT1G67480 (E=2e-177) | kelch repeat-containing F-box family protein (362 aa)
           
  0.517
Bra004227
AT1G67480 (E=4e-183) | kelch repeat-containing F-box family protein (373 aa)
           
  0.517
Bra007399
AT3G58510 (E=2e-250) | DEAD box RNA helicase, putative (RH11) (611 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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