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Bra001664 protein (Brassica rapa) - STRING interaction network
"Bra001664" - AT3G17470 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001664AT3G17470 (E=3e-266) ATCRSH | RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein (576 aa)    
Predicted Functional Partners:
Bra031587
AT1G07615 (E=1e-189) | GTP binding (472 aa)
     
 
  0.919
Bra030693
AT1G07615 (E=8e-196) | GTP binding (487 aa)
     
 
  0.919
Bra023685
AT5G18570 (E=1e-267) | GTP1/OBG family protein (677 aa)
     
 
  0.919
Bra020293
AT5G59750 (E=3e-246) | riboflavin biosynthesis protein, putative (499 aa)
   
 
    0.885
Bra038522
AT2G22450 (E=7e-237) | riboflavin biosynthesis protein, putative (481 aa)
   
 
    0.879
Bra037772
AT5G64300 (E=6e-230) ATGCH, GCH, ATRIBA1, RFD1 | ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II (518 aa)
   
 
    0.879
Bra024283
AT5G64300 (E=2e-238) ATGCH, GCH, ATRIBA1, RFD1 | ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II (530 aa)
   
 
    0.879
Bra014814
AT3G54470 (E=7e-216) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (474 aa)
         
  0.752
Bra003186
AT3G54470 (E=9e-235) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (469 aa)
         
  0.752
Bra020765
AT3G06200 (E=5e-104) | guanylate kinase, putative (233 aa)
       
  0.735
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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