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Bra001670 protein (Brassica rapa) - STRING interaction network
"Bra001670" - AT3G17600 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
Bra001670AT3G17600 (E=2e-053) IAA31 | IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (148 aa)    
Predicted Functional Partners:
Bra035427
AT1G59750 (E=0.0) ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (665 aa)
       
 
0.995
Bra016492
AT1G19850 (E=2e-224) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (836 aa)
       
  0.992
ARF5-1
AT1G19850 (E=0.0) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (867 aa)
       
  0.992
Bra015289
AT1G04100 (E=2e-064) IAA10 | IAA10; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (271 aa)
       
 
0.973
Bra030560
AT1G04250 (E=4e-119) AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (229 aa)
       
 
0.973
Bra015326
AT1G04550 (E=1e-084) IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (235 aa)
       
 
0.973
Bra026755
AT1G15580 (E=4e-071) IAA5, ATAUX2-27, AUX2-27 | IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (156 aa)
       
   
0.973
Bra002479
AT5G60450 (E=0.0) ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (758 aa)
       
   
0.973
Bra040398
AT3G04730 (E=9e-108) IAA16 | IAA16; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (231 aa)
       
 
0.947
Bra036557
AT5G25890 (E=3e-079) IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (175 aa)
       
 
0.947
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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