STRINGSTRING
Bra001671 protein (Brassica rapa) - STRING interaction network
"Bra001671" - AT3G17609 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001671AT3G17609 (E=1e-058) HYH | HYH (HY5-HOMOLOG); DNA binding / transcription factor (150 aa)    
Predicted Functional Partners:
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
       
  0.974
Bra040822
AT2G20050 (E=0.0) | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (966 aa)
       
  0.953
Bra039676
AT1G53510 (E=3e-271) ATMPK18 | ATMPK18; MAP kinase (588 aa)
       
  0.897
Bra039629
AT2G18170 (E=2e-199) ATMPK7, MPK7 | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7); MAP kinase/ kinase (368 aa)
       
  0.897
Bra039292
AT2G46070 (E=6e-210) ATMPK12, MAPK12, MPK12 | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12); MAP kinase/ kinase (372 aa)
       
  0.897
Bra038281
AT3G45640 (E=1e-148) ATMPK3, MPK3 | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3); MAP kinase/ kinase/ protein binding / protein kinase (333 aa)
       
  0.897
Bra038128
AT1G53510 (E=8e-225) ATMPK18 | ATMPK18; MAP kinase (565 aa)
       
  0.897
Bra037234
AT2G18170 (E=9e-200) ATMPK7, MPK7 | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7); MAP kinase/ kinase (368 aa)
       
  0.897
Bra036394
AT4G01370 (E=8e-034) ATMPK4, MPK4 | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (116 aa)
       
  0.897
Bra035437
AT1G59580 (E=6e-202) ATMPK2, MPK2 | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase/ protein kinase (370 aa)
       
  0.897
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]