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Bra001692 protein (Brassica rapa) - STRING interaction network
"Bra001692" - AT3G17970 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra001692AT3G17970 (E=7e-267) atToc64-III | atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (591 aa)    
Predicted Functional Partners:
Bra001942
AT1G48520 (E=2e-241) GATB | GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase (531 aa)
 
  0.993
Bra015031
AT1G48520 (E=1e-032) GATB | GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase (108 aa)
   
  0.988
Bra033992
AT1G67550 (E=0.0) URE | URE (UREASE); urease (835 aa)
     
 
  0.961
Bra025142
AT2G04030 (E=0.0) CR88, EMB1956, HSP90.5 | CR88; ATP binding (787 aa)
     
  0.958
Bra040027
AT3G07770 (E=0.0) | ATP binding (804 aa)
       
  0.957
Bra035599
AT5G56030 (E=1e-179) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (563 aa)
       
  0.957
Bra035593
AT5G56030 (E=1e-245) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (672 aa)
       
  0.957
Bra029677
AT3G07770 (E=3e-154) | ATP binding (726 aa)
       
  0.957
Bra028952
AT5G56010 (E=0.0) HSP81-3 | HSP81-3; ATP binding / unfolded protein binding (699 aa)
       
  0.957
Bra028948
AT5G56030 (E=0.0) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (698 aa)
       
  0.957
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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