STRINGSTRING
Bra001693 protein (Brassica rapa) - STRING interaction network
"Bra001693" - AT3G17980 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001693AT3G17980 (E=5e-081) | C2 domain-containing protein (177 aa)    
Predicted Functional Partners:
Bra029093
AT5G53160 (E=2e-090) | unknown protein (184 aa)
       
      0.829
Bra024995
AT5G46790 (E=4e-081) | unknown protein (210 aa)
       
      0.829
Bra012635
AT4G17870 (E=6e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Streptomyces cyclase/dehydrase (InterPro-IPR005031); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G46790.1); Has 177 Blast hits to 177 proteins in 18 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (191 aa)
       
      0.829
Bra004967
AT2G40330 (E=7e-085) | Bet v I allergen family protein (212 aa)
       
      0.829
Bra000052
AT2G38310 (E=2e-101) | unknown protein (207 aa)
       
      0.829
Bra027411
AT3G13620 (E=1e-254) | amino acid permease family protein (477 aa)
           
  0.583
Bra001514
AT3G13620 (E=4e-250) | amino acid permease family protein (477 aa)
           
  0.583
Bra015612
AT1G47550 (E=0.0) | unknown protein (1112 aa)
       
      0.515
Bra025026
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (771 aa)
           
  0.412
Bra022027
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (776 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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