STRINGSTRING
Bra001694 protein (Brassica rapa) - STRING interaction network
"Bra001694" - AT3G18010 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001694AT3G18010 (E=2e-145) WOX1 | WOX1 (WUSCHEL related homeobox 1); transcription factor (353 aa)    
Predicted Functional Partners:
Bra021458
AT3G02470 (E=7e-173) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (429 aa)
       
      0.618
Bra001046
AT3G02470 (E=8e-179) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (444 aa)
       
      0.618
Bra008662
AT5G15950 (E=1e-192) | adenosylmethionine decarboxylase family protein (368 aa)
       
      0.614
Bra039176
AT3G02470 (E=5e-176) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (364 aa)
       
      0.608
Bra027585
AT1G31800 (E=2e-044) CYP97A3, LUT5 | CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding (461 aa)
       
      0.608
Bra023699
AT5G18930 (E=2e-167) BUD2, SAMDC4 | BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase (353 aa)
       
      0.608
Bra021271
AT3G02470 (E=5e-064) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (327 aa)
       
      0.608
Bra006485
AT5G18930 (E=3e-166) BUD2, SAMDC4 | BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase (346 aa)
       
      0.608
Bra006334
AT5G15950 (E=7e-106) | adenosylmethionine decarboxylase family protein (302 aa)
       
      0.608
Bra002194
AT5G18930 (E=1e-176) BUD2, SAMDC4 | BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase (346 aa)
       
      0.608
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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