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Bra001698 protein (Brassica rapa) - STRING interaction network
"Bra001698" - AT1G48635 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001698AT1G48635 (E=4e-135) PEX3, PEX3-2 | peroxin-3 family protein (367 aa)    
Predicted Functional Partners:
Bra010652
AT4G39850 (E=0.0) PXA1, PED3, CTS | PXA1 (PEROXISOMAL ABC TRANSPORTER 1); ATPase, coupled to transmembrane movement of substances (1433 aa)
     
  0.983
Bra013969
AT5G17550 (E=4e-104) PEX19-2, PEROXIN 19-2 | PEX19-2 (247 aa)
     
  0.975
Bra001079
AT3G03490 (E=8e-100) PEX19-1 | PEX19-1 (peroxin 19-1) (244 aa)
     
  0.975
Bra040195
AT3G04460 (E=5e-095) PEX12, ATPEX12, APM4 | PEX12; protein binding / zinc ion binding ; Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes (381 aa)
     
 
  0.862
Bra027788
AT3G04460 (E=2e-031) PEX12, ATPEX12, APM4 | PEX12; protein binding / zinc ion binding (112 aa)
     
 
  0.862
Bra001105
AT3G04460 (E=9e-092) PEX12, ATPEX12, APM4 | PEX12; protein binding / zinc ion binding (326 aa)
     
 
  0.862
Bra033548
AT1G54350 (E=7e-271) | ABC transporter family protein (693 aa)
     
  0.752
Bra028938
AT5G56290 (E=0.0) PEX5, ATPEX5 | PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding (730 aa)
     
 
  0.745
Bra002826
AT5G56290 (E=6e-213) PEX5, ATPEX5 | PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding (762 aa)
     
 
  0.745
Bra032652
AT1G01860 (E=6e-151) PFC1 | PFC1 (PALEFACE 1); mRNA (2’-O-methyladenosine-N6-)-methyltransferase (588 aa)
     
 
  0.645
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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