STRINGSTRING
Bra001699 protein (Brassica rapa) - STRING interaction network
"Bra001699" - AT3G18200 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001699AT3G18200 (E=2e-182) | nodulin MtN21 family protein (351 aa)    
Predicted Functional Partners:
Bra016161
AT1G71070 (E=5e-198) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (398 aa)
           
  0.468
Bra007960
AT1G71070 (E=4e-204) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (395 aa)
           
  0.468
Bra003937
AT1G71070 (E=7e-203) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (397 aa)
           
  0.468
Bra011009
AT1G26110 (E=8e-228) | unknown protein (597 aa)
           
  0.465
Bra034536
AT4G32830 (E=5e-158) AtAUR1 | AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase (288 aa)
           
  0.454
Bra011386
AT4G32830 (E=1e-159) AtAUR1 | AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase (292 aa)
           
  0.454
Bra036929
AT1G43790 (E=1e-027) TED6 | TED6 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6) (113 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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