STRINGSTRING
Bra001704 protein (Brassica rapa) - STRING interaction network
"Bra001704" - AT3G18390 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001704AT3G18390 (E=0.0) EMB1865 | EMB1865 (embryo defective 1865); RNA binding (840 aa)    
Predicted Functional Partners:
Bra039841
AT4G34110 (E=1e-049) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor (213 aa)
       
  0.658
Bra039195
AT2G23350 (E=1e-243) PAB4, PABP4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (626 aa)
       
  0.658
Bra038203
AT1G49760 (E=3e-014) PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor (75 aa)
       
  0.658
Bra034603
AT4G34110 (E=4e-269) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (619 aa)
       
  0.658
Bra034301
AT3G16380 (E=5e-036) PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding / translation initiation factor (111 aa)
       
  0.658
Bra032172
AT2G23350 (E=4e-237) PAB4, PABP4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (644 aa)
       
  0.658
Bra029387
AT1G45100 (E=9e-070) | polyadenylate-binding protein, putative / PABP, putative (601 aa)
       
  0.658
Bra028827
AT5G03580 (E=9e-033) | polyadenylate-binding protein, putative / PABP, putative (145 aa)
       
  0.658
Bra027167
AT3G16380 (E=5e-071) PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding / translation initiation factor (522 aa)
       
  0.658
Bra022413
AT1G49760 (E=5e-086) PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor (446 aa)
       
  0.658
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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