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Bra001705 protein (Brassica rapa) - STRING interaction network
"Bra001705" - AT3G18400 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001705AT3G18400 (E=2e-135) anac058 | anac058 (Arabidopsis NAC domain containing protein 58); transcription factor (299 aa)    
Predicted Functional Partners:
Bra022363
AT3G18840 (E=4e-287) | pentatricopeptide (PPR) repeat-containing protein (675 aa)
           
  0.573
Bra025527
AT5G41040 (E=7e-242) | transferase family protein (455 aa)
     
   
  0.417
Bra008817
AT5G13580 (E=0.0) | ABC transporter family protein (726 aa)
     
   
  0.408
Bra036588
AT5G26660 (E=1e-133) ATMYB4, ATMYB86 | ATMYB86 (MYB DOMAIN PROTEIN 86); specific transcriptional repressor/ transcription repressor (335 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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